If you go to the Protein Database, you can download the
following files to examine these protein structures using RasMol (available below).

Alternatively, you may download the structures directly from this site by option/clicking on the name to the right (you must download the file, rather than opening it as a webpage).

PDB code

Protein

1BCF

bacterioferritin

1BPI

bovine pancreatic trypsin inhibitor

1BAV

carboxypeptidase (tetramer)

1BBE

collagen

1PEX

collagenase (b-propeller)

1ENR

concanavalin A

1CRN

crambin

1COP

cro repressor

1BBH

cytochrome c' (dimer)

3CYR

cytochrome c3

1ENH

engrailed homeodomain

1DUB

enoyl-CoA hydratase

1AG9

flavodoxin (dimer)

1EMA

green fluorescent protein

1A3N


1HGA
1BBB
1B86

hemoglobin

For take-home exam (2003):
T-state
R-state (CO-bound)
T-state (BPG bound)


1A3R
1A2Y

Immunoglobulins:
anti-rhinoviral peptide (co-crysta1)
antilysozyme Fv fragment (co-crysta1)

104M

myoglobin

2HMQ

myohemerythrin (dimer)

1PKL

pyruvate kinase (octamer)

1AO6

serum albumin

1SLK

silk model 1

2SLK

silk model 2

1SYN

thymidylate synthase

2TBV

tomato bushy stunt virus (trimer)

1AMK

triose phosphate isomerase

1LXA

UDP N-GlcNac acyltransferase

 

 

 

1AKS

1A0J

trypsin

monomer

trypsin tetramer (benzamidine complex)

1GCT

chymotrypsin

1BE6

subtilisin

1TLP

thermolysin (phosphoramidon complex)

1RUV

ribonuclease

1GLK

hexokinase (glucose complex)


2ONE

7ENL

enolase
dimer: chain A complexed with 2-PGA,
chain B complexed with 2-PEP

monomer complexed with 2-PGA

1DLD

lactate dehydrogenase
(theoretical model of NADH/pyruvate complex)

1MIG

catalytic antibody (hapten complex)

 

1EKX

1Q95

3AT1

2AT1

5AT1

4AT1

aspartate transcarbamylase:

homotrimer of catalytic subunits

complexed to PALA

T state (PAM bound)
(3AT1 biological coords)

R state (PAM, malonate bound)
(2AT1 biological coords)

T state (CTP complex)
(5AT1 biological coords)

T state? (ATP complex)
(4AT1 biological coords)

 

1PFK

6PFK

phosphofructokinase:

dimer (FBP/ADP complex)

tetramer (T state)

 

 

1FUM

succinate dehydrogenase (fumarate reductase)

 

1BCC

2BCC

3BCC

IBGY

cytochrome bc1:

bc1 (UQ at Qi site)

bc1 (stigmatellin at Qo site)

bc1 (antimycin A/stigmatellin complex)

cyt bc1 homodimer

1AR1

cytochrome oxidase (bound to antibody)

 

1MAB

1BMF

1EFR

1Q01

F1Fo ATP synthase:

alpha/beta(ADP+Pi)/gamma

F1(alpha3/beta3/gamma subcomplex)

bound to efrapeptin inhibitor

F1Fo substructure (has c ring)

5PRC

purple bacterial reaction center

1BH3

Porin monomer

 

 

1GT0

Nitrogenase

1BL8

Potassium channel

1AGP

Ras (GMP-PNP) complex

1BKD

Ras-GEF complex

1A09

Src SH2 domain bound to Tyr-Pi analog

1CLL

Calmodulin with 4 Ca2+

1CDL

Ca2+/CaM bound to peptide of myosin light chain kinase

1AO6

Ca2+/CaM-dependent kinase

6TNA

tRNA (Phe, yeast)

5TRA

tRNA (Ser, yeast) - has extra loop

1QRT

Gln-tRNA synthetase (class I)

1ASZ

Asp-tRNA synthetase (class II)

4BDP

DNA polymerase I with DNA

1EFA

Lac repressor (helix-turn-helix)

1TRO

Trp repressor (helix-turn-helix)

1ENH

engrailed homeodomain

1D66

Gal4 (Zn finger)

1YSA

Gcn4 (Leu zipper)

1AN2

Max (helix-loop-helix)

1CMA

Met repressor (beta-strand)

 

 

 

 

RasMol files:
For PC: Program & help in zip file

For Mac: Program & help in stuffit file

Download these files and unzip/unstuff them.  They should be able to work immediately.