CH-461
BIOCHEMISTRY

Useful Web Sites

 

General Biochemistry Education

Interactive Biochemistry at the University of Virginia: protein structure, enzymology, etc.
plus other interesting links

Ergito: reviews of Great Experiments in molecular biology, the Genes textbook online and more! 

Protein structure

RasMol Home Page Contains software and examples of viewing biomolecules on a PC or Mac screen. The manual is available as a Word document or PDF file; a shorter reference card is also available as a Word document. (If you did not get a Help file, you can download it here. Save it directly as a file into your RasMol folder.)

For those who had difficulty navigating their site, you can download RasMol here (right-click or option-click to download files):

PC version (UC-Berkeley version 2.6: the most stable one for the PC)

PC version 2.7 (the more powerful version; released Jan 2004, so should be OK) & help file.

Mac version & help file  (Stuffit archive)

The Protein Data Bank Database of 3-dimensional structures of biomolecules.

List of PDB codes for proteins displayed during lectures

Enzymes

            BRENDA: The Comprehensive Enzyme Information System (provided by Univ. of K–ln)

Pathways

Step-by-step Guide to Glycolysis: A very nice guided tour through the reactions and logic of the glycolysis pathway. Start with "Begin at Glucose·" or review the Introduction and Strategy sections immediately above it. (Thanks to Juliet Ramirez for suggesting this site.)

Selected Journals

Journal of Biological Chemistry

Biochemistry

Trends in Biochemical Sciences

Journal of Molecular Biology

EMBO (European Molecular Biology Organization) Journal

Molecular & Cellular Biology

Biochimica et Biophisica Acta (Bioenergetics)

Proceedings of the National Academy of Sciences

Science

Nature

Other resources

PubMed: One of the main ways to search the biomedical literature. The National Library of Medicine maintains this database of scientific articles from a wide variety of journals. I recommend using the Preview/Index feature for your searches.

If you cannot find what you are looking for with PubMed, you should try SciFinder, which is available at Rodgers Library (or in your lab, if you are working as a researcher).


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